gRanges2CamelMeasures: Genomic plots based upon NucleotideDistr objects

In rnaSeqMap: rnaSeq secondary analyses

Description

Various plots of genomic coverage for data from NucleotideDistr objects

Usage

gRanges2CamelMeasures(gR, cvd,  sample.idx1, sample.idx2, sums=NULL, progress=NULL)
allCamelMeasuresForRegion(ch, st, en, str, cvd, sample.idx1, sample.idx2, sums=NULL)

Arguments

ch	chromosome name
st	genomic start
en	genomic end
str	strand
cvd	name of the file with BAM description - covdesc
gR	GenomicRanges object to use as a set of genomic regions to query
sample.idx1,sample.idx2	sample indices
sums	the vector of sums for normalization
progress	every how many regions print a dot for progress indicator

Author(s)

Michal Okoniewski

Examples

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rnaSeqMap documentation built on Nov. 8, 2020, 5:50 p.m.