getBamData: getBamData - getting sample data from BAM file.
In rnaSeqMap: rnaSeq secondary analyses

Add data from experimental samples stored in BAM file.

1	getBamData(rs, exps = NULL, cvd = NULL, covdesc.file = "covdesc")

`rs`	SeqReads object to modify
`exps`	Vector of numbers of experimental samples
`cvd`	Covdesc-like data frame - BAM files are read from row names
`covdesc.file`	Alternatively, the experiment description file

SeqReads object with samples added from the BAM files. List of BAM files comes from the covdesc. The covdesc content becomes phenoData of the object.

Michal Okoniewski, Anna Lesniewska

#  if (xmapConnected())  
#  {
#    rs <- newSeqReads(1,1,20000,1)
#    rs <- getBamData(rs,1:3)
#  }

rnaSeqMap documentation built on Nov. 8, 2020, 5:50 p.m.

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