normalizations: Normalization Methods

Description Usage Arguments Author(s) Examples

Description

Various normalization methods.

Usage

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Arguments

nd

nucleotide distribution object

sums

sum of reads in a sequencing sample

Normalizations of a single coverage profile for multiple samples contained in the NucleotideDistr object. Full description will follow in a paper.

Author(s)

Anna Lesniewska,Michal Okoniewski

Examples

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# if (xmapConnected())
#  {
#  s <- newSeqReads('chr2', 220238268, 220254744, -1)
#  f <- c("test1.bam", "test2.bam", "test3.bam", "test4.bam", "test5.bam")
#  ff <- sapply(f, function(x) system.file("extdata", x, package = "rnaSeqMap"))
#  rs <- getBamData(rs, 1:5, files = ff)    	
#  nd <- getCoverageFromRS(rs, 1:5)
#  min_maxNormalize(nd)
#  }

rnaSeqMap documentation built on Nov. 8, 2020, 5:50 p.m.