Description Usage Arguments Author(s) Examples
Various normalization methods.
1 2 3 4 | standarizationNormalize(nd)
min_maxNormalize(nd)
densityNormalize(nd)
globalCountsNormalize(nd, sums)
|
nd |
nucleotide distribution object |
sums |
sum of reads in a sequencing sample |
Normalizations of a single coverage profile for multiple
samples contained in the NucleotideDistr
object.
Full description will follow in a paper.
Anna Lesniewska,Michal Okoniewski
1 2 3 4 5 6 7 8 9 | # if (xmapConnected())
# {
# s <- newSeqReads('chr2', 220238268, 220254744, -1)
# f <- c("test1.bam", "test2.bam", "test3.bam", "test4.bam", "test5.bam")
# ff <- sapply(f, function(x) system.file("extdata", x, package = "rnaSeqMap"))
# rs <- getBamData(rs, 1:5, files = ff)
# nd <- getCoverageFromRS(rs, 1:5)
# min_maxNormalize(nd)
# }
|
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