buildDESeq: buildDESeq - create CountDataSet

In rnaSeqMap: rnaSeq secondary analyses

Description

Creates CountDataSet from the data in the database using the list of genes supplied - for further analysis with DESeq

Usage

buildDESeq(genes,exps,conds=NULL)

Arguments

genes	vector of Ensembl gene IDs
exps	vector of experiments
conds	Vector of experimental condition descriptions for the samples

Value

CountDataSet object filled with the data of gene-level counts of reads

Author(s)

Michal Okoniewski, Anna Lesniewska

See Also

buildDGEList

Examples

#  if (xmapConnected())  
#  {
#    data(sample_data_rnaSeqMap)
#    gg <- names(rs.list)
#    cds <- buildDESeq(gg,1:6, c("a","b","b","a","a","b"))

# }

rnaSeqMap documentation built on Nov. 8, 2020, 5:50 p.m.