Description Slots/List Components Methods Author(s) See Also
An S4 class that inherits from eSet
and holds all the numeric distributions of functions defined over the genome.
The values may include coverage, splicing, fold change, etc. for a region defined by
genomic coordinates.
Objects of this class contain (at least) the following list components:
chr
: numeric matrix containing the read counts.
start
: data.frame containing the library size and group labels.
end
: data.frame containing the library size and group labels.
strand
: data.frame containing the library size and group labels.
start
: data.frame containing the library size and group labels.
distribs
gives the matrix of distributions from assayData
getDistr
gives a single distributions from assayData
as a vector
newNuctleotideDistr (distribs, chr, start, end, strand, type="UNKNOWN", phenoData=NULL, featureData=NULL)
constructor from a matrix of data and chromosome coordinates.
Anna Lesniewska, Michal Okoniewski
SeqReads, NDtransforms
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