API for rnaSeqMap
rnaSeq secondary analyses

Global functions
NucleotideDistr-class Man page
RleList2matrix Man page Source code
SeqReads Man page
SeqReads-class Man page
addBamData Man page Source code
addDataToReadset Man page Source code
addExperimentsToReadset Man page Source code
allCamelMeasuresForRegion Man page Source code
averageND Source code
averageND Man page
bam2sig Man page Source code
buildDESeq Man page Source code
buildDGEList Man page Source code
chr.convert Source code
chromosome.char Source code
chromosome.number Source code
combineND Source code
combineND Man page
countRSReads Source code
countz Source code
covFun Source code
densityNormalize Man page Source code
derywatywka Source code
diff_area Man page Source code
diff_derivative_area Man page Source code
distrCOVPlot Man page Source code
distrCOVPlotg Man page Source code
distrSIPlot Man page Source code
distribs Man page Source code
exonCoverage Source code
fillRleList Source code
findRegionsAsIR Man page Source code
findRegionsAsND Man page Source code Source code
fiveCol2GRanges Man page Source code Source code
gRanges2CamelMeasures Man page Source code
gcoverage Man page
geneCoverage Source code
geneInChromosome Man page Source code
generatorAdd Man page Source code
generatorAddSquare Man page Source code
generatorMultiply Man page Source code
generatorPeak Man page Source code
generatorSynth Man page Source code
generatorTrunc Man page Source code
getAvgND Source code
getBamData Man page Source code
getCoverageFromRS Man page Source code
getData Man page Source code
getDistr Man page Source code
getExpDescription Man page Source code
getFCFromND Source code
getFCFromND Man page
getSIFromND Source code
getSIFromND Man page
getSumsExp Man page Source code
ghistogram Man page
globalCountsNormalize Man page Source code
homo_sapiens Source code
hump_diff1 Man page Source code
hump_diff2 Man page Source code
ks_test Man page Source code
localMax Source code
log2ND Source code
log2ND Man page
methylobacterium_extorquens Source code
min_maxNormalize Man page Source code
munion Source code
mus_musculus Source code
newNuctleotideDistr Man page Source code
newSeqReads Man page Source code
newSeqReadsFromGene Man page Source code
normalizeBySum Man page Source code
onLoad Source code
parseGff3 Man page Source code
plotCoverageHistogram Man page Source code
plotExonCoverage Man page Source code
plotGeneCoverage Man page Source code
plotGeneExonCoverage Man page Source code
plotRegionCoverage Man page Source code
plotSI Man page Source code
pochodna Source code
pp_derivative_plot Man page Source code
pp_plot Man page Source code
qq_derivative_plot Man page Source code
qq_plot Man page Source code
rattus_norvegius Source code
readsForGene Source code
readsInRange Man page Source code
regionBasedCoverage Man page Source code
regionCoverage Man page Source code
regionmining Man page
rmse Source code
rs.list Man page
rsCount Source code
sample_data_rnaSeqMap Man page
setData Man page Source code
setSAXPYData Man page Source code
setSpecies Man page Source code
sigRegions Source code
simplePlot Man page Source code Source code
spaceInChromosome Man page Source code
splicingind Man page
standarizationNormalize Man page Source code
sumND Source code
sumND Man page
tunion Source code
wytnij Source code
rnaSeqMap documentation built on May 2, 2018, 2:37 a.m.