getCoverageFromRS: getCoverageFromRS - conversion to coverage object
In rnaSeqMap: rnaSeq secondary analyses
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Calculates the coverage function for the reads encapsulated in the SeqReads object.
Usage
1
getCoverageFromRS(rs, exps)
Arguments
rs
SeqReads object to modify
exps
Vector of numbers of experimental samples in xXMAP
Value
NucleotideDistr object with coverage matrix in assayData slot and type "COV".
Author(s)
Michal Okoniewski, Anna Lesniewska
Examples
1
2
3
4
5
6
# if (xmapConnected())
# {
# rs <- newSeqReads(1,1,20000,1)
# rs <- addExperimentsToReadset(rs,1:6)
# nd.cov <- getCoverageFromRS(rs,1:3)
# }
rnaSeqMap documentation built on Nov. 8, 2020, 5:50 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
Calculates the coverage function for the reads encapsulated in the SeqReads object.
Usage
1 | getCoverageFromRS(rs, exps)
|
Arguments
rs |
SeqReads object to modify |
exps |
Vector of numbers of experimental samples in xXMAP |
Value
NucleotideDistr object with coverage matrix in assayData slot and type "COV".
Author(s)
Michal Okoniewski, Anna Lesniewska
Examples
1 2 3 4 5 6 | # if (xmapConnected())
# {
# rs <- newSeqReads(1,1,20000,1)
# rs <- addExperimentsToReadset(rs,1:6)
# nd.cov <- getCoverageFromRS(rs,1:3)
# }
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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