Files in rnaSeqMap
rnaSeq secondary analyses
NAMESPACE
DESCRIPTION
build/vignette.rds
src/regionmining.c
src/ghistogram.c
src/Rinit.c
src/splicingind.c
src/gcoverage.c
data/sample_data_rnaSeqMap.RData
R/bam2sig.R
R/parseGff3.R
R/generators.R
R/utils.R
R/normalizations.R
R/pipelines.R
R/NucleotideDistr.R
R/NDtransforms.R
R/measures.R
R/zzz.R
R/plots.R
R/SeqReads.R
R/NDplots.R
R/camelWrapper.R
vignettes/rnaSeqMap_with_db.Rnw.gz
vignettes/rnaSeqMap_with_db.pdf.gz
vignettes/rnaSeqMap.Rnw
man/getExpDescription.Rd
man/NDplots.Rd
man/addDataToReadset.Rd
man/fiveCol2GRanges.Rd
man/getSumsExp.Rd
man/NucleotideDistr-class.Rd
man/addExperimentsToReadset.Rd
man/rs.list.Rd
man/geneInChromosome.Rd
man/getCoverageFromRS.Rd
man/getBamData.Rd
man/regionBasedCoverage.Rd
man/setSpecies.Rd
man/readsInRange.Rd
man/plotGeneCoverage.Rd
man/buildDESeq.Rd
man/normalizeBySum.Rd
man/averageND.Rd
man/findRegionsAsIR.Rd
man/addBamData.Rd
man/normalizations.Rd
man/measures.Rd
man/setData.Rd
man/regionCoverage.Rd
man/findRegionsAsND.Rd
man/SeqReds.Rd
man/getSIFromND.Rd
man/parseGff3.Rd
man/getFCFromND.Rd
man/spaceInChromosome.Rd
man/setSAXPYData.Rd
man/RleList2matrix.Rd
man/getData.Rd
man/simplePlot.Rd
man/bam2sig.Rd
man/buildDGEList.Rd
man/generators.Rd
man/gRanges2CamelMeasures.Rd
inst/doc/rnaSeqMap.Rnw
inst/doc/rnaSeqMap.R
inst/doc/rnaSeqMap.pdf
inst/scripts/rnaSeqMap.sql
inst/scripts/seq_read.sql
inst/scripts/importdb.bat
inst/scripts/README_SQL
inst/scripts/bio_sample.sql
inst/scripts/indices.sql
inst/scripts/importdb.sh
inst/scripts/procedures.sql
