Description Usage Arguments Value Examples
Perform KMeans clustering on a
SingleCellExperiment
object, with
kmeans
.
1 2 3 4 5 6 7 8 9 10 |
inSCE |
A |
useReducedDim |
A single |
clusterName |
A single |
nCenters |
An |
nIter |
An |
nStart |
An |
seed |
An |
algorithm |
A single |
The input SingleCellExperiment
object with factor
cluster labeling updated in
colData(inSCE)[[clusterName]]
.
1 2 3 4 | data("mouseBrainSubsetSCE")
mouseBrainSubsetSCE <- runKMeans(mouseBrainSubsetSCE,
useReducedDim = "PCA_logcounts",
nCenters = 2)
|
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