Description Usage Arguments Value Examples
View source: R/seuratFunctions.R
seuratJackStrawPlot Computes the plot object for jackstraw plot from the pca slot in the input sce object
1 | seuratJackStrawPlot(inSCE, dims = NULL)
|
inSCE |
(sce) object from which to compute the jackstraw plot (pca should be computed) |
dims |
Number of components to plot in Jackstraw. If |
plot object
1 2 3 4 5 6 7 8 9 10 | data(scExample, package = "singleCellTK")
## Not run:
sce <- seuratNormalizeData(sce, useAssay = "counts")
sce <- seuratFindHVG(sce, useAssay = "counts")
sce <- seuratScaleData(sce, useAssay = "counts")
sce <- seuratPCA(sce, useAssay = "counts")
sce <- seuratComputeJackStraw(sce, useAssay = "counts")
seuratJackStrawPlot(sce)
## End(Not run)
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