trimCounts: Trim Counts
In singleCellTK: Comprehensive and Interactive Analysis of Single Cell RNA-Seq Data
Description
Usage
Arguments
Value
Examples
Description
Trims an input count matrix such that each value greater than a
threshold value and each value less than a provided
lower threshold value is trimmed to the lower treshold value.
Usage
1
trimCounts(counts, trimValue = c(10, -10))
Arguments
counts
matrix
trimValue
where trimValue[1] for upper threshold and trimValue[2] as lower threshold
(default is c(10,-10))
Value
trimmed counts matrix
Examples
1
2
data(sce_chcl, package = "scds")
assay(sce_chcl, "countsTrimmed") <- trimCounts(assay(sce_chcl, "counts"), c(10, -10))
singleCellTK documentation built on Nov. 8, 2020, 5:21 p.m.
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Description Usage Arguments Value Examples
Description
Trims an input count matrix such that each value greater than a threshold value and each value less than a provided lower threshold value is trimmed to the lower treshold value.
Usage
1 | trimCounts(counts, trimValue = c(10, -10))
|
Arguments
counts |
matrix |
trimValue |
where trimValue[1] for upper threshold and trimValue[2] as lower threshold (default is c(10,-10)) |
Value
trimmed counts matrix
Examples
1 2 | data(sce_chcl, package = "scds")
assay(sce_chcl, "countsTrimmed") <- trimCounts(assay(sce_chcl, "counts"), c(10, -10))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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