EXP_to_CellDataSet: A function for constructing a Monocle's CellDataSet object...

Description Usage Arguments Value

Description

A function for constructing a Monocle's CellDataSet object from an expression matrix

Usage

1
EXP_to_CellDataSet(log2_exp = NULL, expression_data_raw = NULL, lod = 1)

Arguments

log2_exp

An log2 transformed expresssion matrix containing n-rows of cells and m-cols of genes.

expression_data_raw

A data frame containing raw expression values, with rownames of cells and colnames of genes.

lod

A value of limit of detection in the unit of TPM/CPM/RPKM.

Value

A CellDataSet object.



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