fluidigmSC_removeGenesByLinearExpForAllType_log2: A gene trimming function

Description Usage Arguments Value

View source: R/uSort_preProcess.R

Description

A gene trimming function removes genes whose average expression value is below the log2(threshold); reproduced from FluidigmSC package.

Usage

1

Arguments

log2ex_data

A data frame containing log2 tranformed expression values, with rownames of genes and colnames of cells.

threshold

A limit of detection in the unit of TPM/CPM/RPMK.

Value

A vector of character containing gene names of those passed the filtering.


uSORT documentation built on May 2, 2018, 4:04 a.m.