A wrapper function for Side-to-Side (STS) sorting.

Description

A wrapper function for Side-to-Side (STS) sorting as proposed in [Tsafrir et al. 2005].

Usage

1
STS_sorting_wrapper(expr, no_randomization = 10)

Arguments

expr

An expresssion matrix containing n-rows of cells and m-cols of genes.

no_randomization

An integer number indicating the number of repeated sorting, each of which uses a randomaly selected initial cell ordering.

Value

A list containing permutated.expr(data frame) and best.cost(a numeric value).

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