neighborhood_sorting_wrapper: A wrapper function for Neighborhood sorting.

Description Usage Arguments Value

View source: R/SPIN.r

Description

A wrapper function for Neighborhood sorting as proposed in [Tsafrir et al. 2005].

Usage

1
neighborhood_sorting_wrapper(expr, sigma_width = 1, no_randomization = 10)

Arguments

expr

An expresssion matrix containing n-rows of cells and m-cols of genes.

sigma_width

An integer number determining the degree of spread of the gaussian distribution which is used for computing weight matrix for Neighborhood sorting method.

no_randomization

An integer number indicating the number of repeated sorting, each of which uses a randomaly selected initial cell ordering.

Value

A list containing permutated.expr(data frame) and best.cost(a numeric value).


uSORT documentation built on Nov. 1, 2018, 5:02 a.m.