Description Usage Arguments Value
A wrapper function for Neighborhood sorting as proposed in [Tsafrir et al. 2005].
1 | neighborhood_sorting_wrapper(expr, sigma_width = 1, no_randomization = 10)
|
expr |
An expresssion matrix containing n-rows of cells and m-cols of genes. |
sigma_width |
An integer number determining the degree of spread of the gaussian distribution which is used for computing weight matrix for Neighborhood sorting method. |
no_randomization |
An integer number indicating the number of repeated sorting, each of which uses a randomaly selected initial cell ordering. |
A list containing permutated.expr
(data frame) and best.cost
(a numeric value).
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