diff_test_helper1: A modified monocle's helper function

Description Usage Arguments Value Author(s)

Description

A modified monocle's function for 'diff_test_helper1' which includes more attempts on finding models and also compute max. magnitude change in expression values predicted by GLM model

Usage

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diff_test_helper1(x, fullModelFormulaStr, reducedModelFormulaStr,
  expressionFamily, lowerDetectionLimit = 0.1, type_ordering = "linear")

Arguments

x

an expression data

fullModelFormulaStr

a Monocle's model structure

reducedModelFormulaStr

a Monocle's model structure

expressionFamily

a Monocle's family character

lowerDetectionLimit

a threshold value

type_ordering

a character indicating the type of underlying cell progression, i.e. linear or circular

Value

test_res a dataframe containing status of modeling and adjusted p-value

Author(s)

MaiChan Lau



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