diff_test_helper1: A modified monocle's helper function

In uSORT: uSORT: A self-refining ordering pipeline for gene selection

Description

A modified monocle's function for 'diff_test_helper1' which includes more attempts on finding models and also compute max. magnitude change in expression values predicted by GLM model

Usage

diff_test_helper1(x, fullModelFormulaStr, reducedModelFormulaStr,
  expressionFamily, lowerDetectionLimit = 0.1, type_ordering = "linear")

Arguments

x	an expression data
fullModelFormulaStr	a Monocle's model structure
reducedModelFormulaStr	a Monocle's model structure
expressionFamily	a Monocle's family character
lowerDetectionLimit	a threshold value
type_ordering	a character indicating the type of underlying cell progression, i.e. linear or circular

Value

test_res a dataframe containing status of modeling and adjusted p-value

Author(s)

MaiChan Lau

uSORT documentation built on Nov. 8, 2020, 5:18 p.m.