fluidigmSC_removeGenesByLinearExpForAllType: A gene trimming function

In uSORT: uSORT: A self-refining ordering pipeline for gene selection

Description

A gene trimming function removes genes whose average expression value is below the log2(threshold), and also present in at least 10

Usage

fluidigmSC_removeGenesByLinearExpForAllType(log2ex_data, log2ex_avg_data,
  threshold)

Arguments

log2ex_data	A data frame containing log2 tranformed expression values, with rownames of genes and colnames of cells.
log2ex_avg_data	A data frame containing log2 tranformed average expression values for individual gene.
threshold	A limit of detection in the unit of TPM/CPM/RPMK.

Value

A vector of character containing gene names of those passed the filtering.

uSORT documentation built on Nov. 8, 2020, 5:18 p.m.