fluidigmSC_removeGenesByLinearExpForAllType: A gene trimming function

Description Usage Arguments Value

View source: R/uSort_preProcess.R

Description

A gene trimming function removes genes whose average expression value is below the log2(threshold), and also present in at least 10

Usage

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fluidigmSC_removeGenesByLinearExpForAllType(log2ex_data, log2ex_avg_data,
  threshold)

Arguments

log2ex_data

A data frame containing log2 tranformed expression values, with rownames of genes and colnames of cells.

log2ex_avg_data

A data frame containing log2 tranformed average expression values for individual gene.

threshold

A limit of detection in the unit of TPM/CPM/RPMK.

Value

A vector of character containing gene names of those passed the filtering.


uSORT documentation built on Nov. 1, 2018, 5:02 a.m.