fluidigmSC_readLinearExp: An expression reading function

Description Usage Arguments Value

View source: R/uSort_preProcess.R

Description

An expression reading function which imports expression data from .txt file, and then computes log2 transformed data, reproduced from FluidigmSC package.

Usage

1
fluidigmSC_readLinearExp(exp_file = TRUE, lod = 1)

Arguments

exp_file

Input file name in txt format, with rownames of cells and colnames of genes.

lod

A value of limit of detection in the unit of TPM/CPM/RPKM. It will be used as the starting value for outlier cell detection and the basis for removing scarce genes.

Value

A list containing expression_data_raw(data frame), log2ex_data(data frame), and log2ex_avg_data(data frame).


uSORT documentation built on Nov. 1, 2018, 5:02 a.m.