fluidigmSC_readLinearExp: An expression reading function
In uSORT: uSORT: A self-refining ordering pipeline for gene selection
Description
Usage
Arguments
Value
View source: R/uSort_preProcess.R
Description
An expression reading function which imports expression data from .txt file, and then
computes log2 transformed data, reproduced from FluidigmSC package.
Usage
1
fluidigmSC_readLinearExp(exp_file = TRUE, lod = 1)
Arguments
exp_file
Input file name in txt format, with rownames of cells and colnames of genes.
lod
A value of limit of detection in the unit of TPM/CPM/RPKM. It will be used as the starting value
for outlier cell detection and the basis for removing scarce genes.
Value
A list containing expression_data_raw(data frame), log2ex_data(data frame),
and log2ex_avg_data(data frame).
uSORT documentation built on Nov. 8, 2020, 5:18 p.m.
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Description Usage Arguments Value
View source: R/uSort_preProcess.R
Description
An expression reading function which imports expression data from .txt file, and then computes log2 transformed data, reproduced from FluidigmSC package.
Usage
1 | fluidigmSC_readLinearExp(exp_file = TRUE, lod = 1)
|
Arguments
exp_file |
Input file name in txt format, with rownames of cells and colnames of genes. |
lod |
A value of limit of detection in the unit of TPM/CPM/RPKM. It will be used as the starting value for outlier cell detection and the basis for removing scarce genes. |
Value
A list containing expression_data_raw(data frame), log2ex_data(data frame),
and log2ex_avg_data(data frame).
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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