variability_per_gene: A utility function for scattering_quantification_per_gene

Description Usage Arguments Value Author(s)

View source: R/uSORT_GeneSelection.R

Description

A utility function for scattering_quantification_per_gene which computes the degree of scattering for single gene, whereby the value is computed by summing over the local values of smaller local windows

Usage

1
2
variability_per_gene(logExp = NULL, min_expr = 0.1,
  window_size_perct = 0.1, nonZeroExpr_perct = 0.1)

Arguments

logExp

a log-scale expression vector of a gene

min_expr

a minimum expression value

window_size_perct

a window size (in dispersion level

nonZeroExpr_perct

a minimum amount of cells (in expression, otherwise the associated window will be assigned to 0 disperson value

Value

integer

Author(s)

MaiChan Lau


uSORT documentation built on Nov. 17, 2017, 10:58 a.m.