API for variancePartition
Quantify and interpret divers of variation in multilevel gene expression experiments
| Global functions | |
|---|---|
| .change_t_df | Source code |
| .checkNA | Source code |
| .eval_lmm | Source code |
| .fitExtractVarPartModel | Source code |
| .fitVarPartModel | Source code |
| .getAllUniContrasts | Man page Source code |
| .getContrastInit | Source code |
| .get_pids | Source code |
| .isDisconnected | Source code |
| .isMixedModelFormula | Man page Source code |
| .plotVarPart | Source code |
| .sortCols | Source code |
| .standard_transform | Man page Source code |
| .standardized_t_stat | Source code |
| .topTableT | Source code |
| ESS | Man page |
| ESS,lmerMod-method | Man page |
| FMT | Man page Source code |
| FMT-class | Man page |
| FMT.ZI | Man page Source code |
| MArrayLM2-class | Man page |
| VarParCIList-class | Man page |
| VarParFitList-class | Man page |
| [.MArrayLM2 | Man page |
| as.data.frame | Man page |
| as.data.frame,varPartResults-method | Man page |
| as.matrix | Man page |
| as.matrix,varPartResults-method | Man page |
| calcVarPart | Man page |
| calcVarPart,glm-method | Man page |
| calcVarPart,lm-method | Man page |
| calcVarPart,lmerMod-method | Man page |
| canCorPairs | Man page Source code |
| classifyTestsF | Man page |
| classifyTestsF,MArrayLM2-method | Man page |
| colinearityScore | Man page Source code |
| countMatrix | Man page |
| dream | Man page Source code |
| eBayes,MArrayLM2-method | Man page |
| eBayesFMT | Man page Source code |
| exprIter | Source code |
| extractVarPart | Man page Source code |
| fitExtractVarPartModel | Man page |
| fitExtractVarPartModel,EList-method | Man page |
| fitExtractVarPartModel,ExpressionSet-method | Man page |
| fitExtractVarPartModel,data.frame-method | Man page |
| fitExtractVarPartModel,matrix-method | Man page |
| fitExtractVarPartModel,sparseMatrix-method | Man page |
| fitVarPartModel | Man page |
| fitVarPartModel,EList-method | Man page |
| fitVarPartModel,ExpressionSet-method | Man page |
| fitVarPartModel,data.frame-method | Man page |
| fitVarPartModel,matrix-method | Man page |
| fitVarPartModel,sparseMatrix-method | Man page |
| geneCounts | Man page |
| geneExpr | Man page |
| getContrast | Man page Source code |
| getVarianceComponents | Source code |
| get_prediction | Man page |
| get_prediction,lm-method | Man page |
| get_prediction,lmerMod-method | Man page |
| ggColorHue | Man page Source code |
| heatmap.3 | Source code |
| info | Man page |
| iterBatch | Source code |
| metadata | Man page |
| plotCompareP | Man page Source code |
| plotContrasts | Man page Source code |
| plotCorrMatrix | Man page Source code |
| plotCorrStructure | Man page Source code |
| plotPercentBars | Man page Source code |
| plotStratify | Man page Source code |
| plotStratifyBy | Man page Source code |
| plotVarPart | Man page |
| plotVarPart,data.frame-method | Man page |
| plotVarPart,matrix-method | Man page |
| plotVarPart,varPartResults-method | Man page |
| residuals,MArrayLM-method | Man page |
| residuals,MArrayLM2-method | Man page |
| residuals,VarParFitList-method | Man page |
| residuals.MArrayLM2 | Source code |
| sortCols | Man page |
| sortCols,data.frame-method | Man page |
| sortCols,matrix-method | Man page |
| sortCols,varPartResults-method | Man page |
| subset.MArrayLM2,MArrayLM2-method | Man page |
| topTable | Man page |
| topTable,FMT-method | Man page |
| topTable,MArrayLM2-method | Man page |
| toptable,FMT-method | Man page |
| toptable,MArrayLM-method | Man page |
| toptable,MArrayLM2-method | Man page |
| varParFrac-class | Man page |
| varPartConfInf | Man page Source code |
| varPartDEdata | Man page |
| varPartData | Man page |
| varPartResults-class | Man page |
| voomWithDreamWeights | Man page Source code |
