Biocview "SomaticMutation"

Assess Tumor Microsatellite Instability with a Decision Tree Classifier from Exome Somatic Mutations

A Tool to Analyze and Design NGS Based Custom Gene Panels

Clonal ordering and visualization

Comprehensive genome-wide analysis of mutational processes

Conducting statistical inference on comparing the mutational exposures of mutational signatures by using hierarchical latent Dirichlet allocation

Decomposition of individual tumors into mutational signatures by signature refitting

Detection of clonally exclusive gene or pathway pairs in a cohort of cancer patients

Empirical Bayesian approach to mutational signature discovery

FIREVAT, FInding REliable Variants without ArTifacts

Forward Genetic Simulation of Cancer Progression with Epistasis

Genetic Algorithms for Understanding Clonal Heterogeneity and Ordering

Identification and Annotation of Protein Hotspot Residues

Identification and Assessment of Single Nucleotide Variants through Shifts in Non-Consensus Base Call Frequencies

Identification of mutational clusters in protein quaternary structures.

Longitudinal Analysis of Cancer Evolution (LACE)

LowMACA - Low frequency Mutation Analysis via Consensus Alignment

Mapping Spectra to Mutational Signatures Based on Shot-Noise Modeling

Mosaic Aneuploidy Detection and Quantification using Massive Parallel Sequencing Data

Multi-Omics integration and VIsualization in Cancer Subtyping

Mutational Signature Comprehensive Analysis Toolkit

Novel Mutational Signature Analysis

Package

Random walk with restart on multiplex and heterogeneous Networks

Selecting the number of mutational signatures using a perplexity-based measure and cross-validation

Semi-Supervised Mixture Model

Somatic Signatures

SparseSignatures

Summarize, Analyze and Visualize MAF Files

Supervised mutational signatures

TRONCO, an R package for TRanslational ONCOlogy

Tumor subclonality of expression-based cancer subtypes

Viral Evolution ReconStructiOn (VERSO)

Visual comparison of mutational processes in a set of tumors

Yet Another Package for Signature Analysis