save_credentials: Save MongoDB Credentials

In CEDARS: Simple and Efficient Pipeline for Electronic Health Record Annotation

Description

Saves MongoDB credentials as 'db_credentials.Rdata' and Shiny app file as 'app.R'. Those two files should be copied to the Shiny Server app directory. Needed only if using Shiny Server; credentials are entered in the command line for local app use.

Usage

save_credentials(
  user,
  password,
  host,
  port,
  database,
  LDAP,
  destination_path = getwd()
)

Arguments

user	MongoDB user name.
password	MongoDB user password.
host	MongoDB server host.
port	MongoDB port.
database	MongoDB database name.
LDAP	is LDAP being used? In this case, CEDARS will not prompt for user ID/password and a check will NOT be made on the users table. Access will be granted, relying on LDAP authentication. Annotations will be stamped with LDAP user name.
destination_path	Folder where the files should be saved. Default is working directory.

Value

No return value, saves DB administrator credentials in local folder.

Examples

## Not run: 
save_credentials(user = 'John', password = 'db_password_1234', host = 'server1234',
database = 'myDB', LDAP = FALSE, destination_path = getwd())

## End(Not run)

CEDARS documentation built on Feb. 7, 2021, 5:06 p.m.