comp.igr.transc.levels: Compile the transcription levels for the intergenic regions.

Description Usage Arguments Author(s)

View source: R/CONDOP.R

Description

Internal function to quantify expression at the intergenic-level.

Usage

1
comp.igr.transc.levels(genes, igrs, cd, transcCDSs, str = "+")

Arguments

genes

Data table containing gene annotations.

cd

Data table containing the coverage depth of an RNA-seq expression profile(s).

transcCDSs

Transcription levels for the coding regions.

str

Charcater value indicating the strand. Defauls value is "+".

genes

Data tbale containing intergenic region annotations.

Author(s)

Vittorio Fortino comp.igr.transc.levels()


CONDOP documentation built on May 2, 2019, 1:26 p.m.