comp.igr.transc.levels: Compile the transcription levels for the intergenic regions.

In CONDOP: Condition-Dependent Operon Predictions

Description

Internal function to quantify expression at the intergenic-level.

Usage

comp.igr.transc.levels(genes, igrs, cd, transcCDSs, str = "+")

Arguments

genes	Data table containing gene annotations.
cd	Data table containing the coverage depth of an RNA-seq expression profile(s).
transcCDSs	Transcription levels for the coding regions.
str	Charcater value indicating the strand. Defauls value is "+".
genes	Data tbale containing intergenic region annotations.

Author(s)

Vittorio Fortino comp.igr.transc.levels()

CONDOP documentation built on May 2, 2019, 1:26 p.m.