select.pops: Define a set of gene pairs POPs with an "operon status" to...
In CONDOP: Condition-Dependent Operon Predictions

Internal function to build a data table containing gene pairs and the correspoding transcriptomic/genomic feature values. The operon classifier trained/validated on the OPs and NOPs is used to predict the operon status of these gene pairs.

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select.pops(OPs, NOPs, genes.and.operons, transcCDSs, transcIGRs.pos,
  transcIGRs.neg, minExprCDS = 0.1, minExprIGR = 0.25, maxLenIGR = 150,
  POSSs, POESs, max.start.transc, max.end.transc, wseq, verbose = TRUE, ...)

`OPs`	Data table including the confirmed operon pairs (OPs). See `select.ops`.
`genes.and.operons`	Data table merging gene(s) and operon(s) annotations. See `join.genes.and.operons`.
`transcCDSs`	Transcription levels for the coding regions. See `comp.gene.transc.levels`.
`transcIGRs.pos`	Transcription levels for the intergenic regions (forard strand). See `comp.igr.transc.levels`.
`transcIGRs.neg`	Transcription levels for the intergenic regions (reverse strand). See `comp.igr.transc.levels`.
`minExprCDS`	Minimum expression level for the coding sequence regions (CDSs). Default values is 0.1.
`minExprIGR`	Minimum expression level for the intergenic regions (IGRs). Default values is 0.25.
`maxLenIGR`	Maximum length for the intergenic regions (IGRs). Default values is 150.
`POSSs`	Data table representing a set of putative operon start-points.
`POESs`	Data table representing a set of putative operon end-points.
`max.start.transc`	Cutoff values for the start transcription points. Default values is 0.1.
`max.end.transc`	Cutoff values for the end transcription points. Default values is 0.1.
`wseq`	Sequence genome.
`verbose`	Default logical value is TRUE.
`OPs`	Data table including the confirmed non-operon pairs (NOPs). See `select.nops`.