select.ops: Define a set of OPs which is used to train the operon...

In CONDOP: Condition-Dependent Operon Predictions

Description

Build a data table containing confirmed operon pairs (OPs) and the feature values.

Usage

select.ops(listOperons, genes.and.operons, transcCDSs, transcIGRs.pos,
  transcIGRs.neg, wseq, verbose = TRUE)

Arguments

listOperons	List of confirmed operons. See compile.confirmed.operons.
genes.and.operons	Data table merging gene(s) and operon(s) annotations. See join.genes.and.operons.
transcCDSs	Transcription levels for the coding regions. See comp.gene.transc.levels.
transcIGRs.pos	Transcription levels for the intergenic regions (forard strand). See comp.igr.transc.levels.
transcIGRs.neg	Transcription levels for the intergenic regions (reverse strand). See comp.igr.transc.levels.
wseq	Sequence genome.
verbose	Default logical value is TRUE.

Author(s)

Vittorio Fortino select.ops()

CONDOP documentation built on May 2, 2019, 1:26 p.m.