select.ops: Define a set of OPs which is used to train the operon...

Description Usage Arguments Author(s)

View source: R/CONDOP.R

Description

Build a data table containing confirmed operon pairs (OPs) and the feature values.

Usage

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select.ops(listOperons, genes.and.operons, transcCDSs, transcIGRs.pos,
  transcIGRs.neg, wseq, verbose = TRUE)

Arguments

listOperons

List of confirmed operons. See compile.confirmed.operons.

genes.and.operons

Data table merging gene(s) and operon(s) annotations. See join.genes.and.operons.

transcCDSs

Transcription levels for the coding regions. See comp.gene.transc.levels.

transcIGRs.pos

Transcription levels for the intergenic regions (forard strand). See comp.igr.transc.levels.

transcIGRs.neg

Transcription levels for the intergenic regions (reverse strand). See comp.igr.transc.levels.

wseq

Sequence genome.

verbose

Default logical value is TRUE.

Author(s)

Vittorio Fortino select.ops()


CONDOP documentation built on May 2, 2019, 1:26 p.m.