Define the set of OPs annotated in DOOR.

Description

Build a data table containing the transcriptomic/genomic feature values of operon pairs annotated in DOOR. The operon classifier trained/validated on the OPs and NOPs is used to predict the operon status of these gene pairs.

Usage

1
2
select.ops.indoor(genes.and.operons, transcCDSs, transcIGRs.pos, transcIGRs.neg,
  wseq, verbose = TRUE, ...)

Arguments

genes.and.operons

Data table merging gene(s) and operon(s) annotations. See join.genes.and.operons.

transcCDSs

Transcription levels for the coding regions. See comp.gene.transc.levels.

transcIGRs.pos

Transcription levels for the intergenic regions (forard strand). See comp.igr.transc.levels.

transcIGRs.neg

Transcription levels for the intergenic regions (reverse strand). See comp.igr.transc.levels.

wseq

Sequence genome.

verbose

Default logical value is TRUE.

Author(s)

Vittorio Fortino select.ops.indoor()

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