pre.processing: Normalize the data before the classification step.

In CONDOP: Condition-Dependent Operon Predictions

Description

n0 - without normalization n1 - standardization ((x-mean)/sd) n2 - positional standardization ((x-median)/mad) n3 - unitization ((x-mean)/range) n4 - unitization with zero minimum ((x-min)/range) n5 - normalization in range <-1,1> ((x-mean)/max(abs(x-mean)))

Usage

pre.processing(OPs, NOPs, POPs, DOPs, type = "n0", verbose = TRUE, ...)

Arguments

OPs	Data table including the confirmed operon pairs (OPs). See select.ops.
POPs	Data table including gene pairs with an operon status to (re)define (POPs). See select.pops.
DOPs	Data table including the operon pairs annotated in DOOR database (DOPs). See select.ops.indoor.
type	Charcater vector indicating the method to use for the normalization step. Default value is "n0".
verbose	Default logical value is TRUE.
OPs	Data table including the confirmed non-operon pairs (NOPs). See select.nops.

Author(s)

Vittorio Fortino pre.processing()

CONDOP documentation built on May 2, 2019, 1:26 p.m.