pre.processing: Normalize the data before the classification step.

Description Usage Arguments Author(s)

View source: R/CONDOP.R

Description

n0 - without normalization n1 - standardization ((x-mean)/sd) n2 - positional standardization ((x-median)/mad) n3 - unitization ((x-mean)/range) n4 - unitization with zero minimum ((x-min)/range) n5 - normalization in range <-1,1> ((x-mean)/max(abs(x-mean)))

Usage

1
pre.processing(OPs, NOPs, POPs, DOPs, type = "n0", verbose = TRUE, ...)

Arguments

OPs

Data table including the confirmed operon pairs (OPs). See select.ops.

POPs

Data table including gene pairs with an operon status to (re)define (POPs). See select.pops.

DOPs

Data table including the operon pairs annotated in DOOR database (DOPs). See select.ops.indoor.

type

Charcater vector indicating the method to use for the normalization step. Default value is "n0".

verbose

Default logical value is TRUE.

OPs

Data table including the confirmed non-operon pairs (NOPs). See select.nops.

Author(s)

Vittorio Fortino pre.processing()


CONDOP documentation built on May 2, 2019, 1:26 p.m.