test.corr: Statistical test to find a putative transcription start (or...

In CONDOP: Condition-Dependent Operon Predictions

Description

Test the correlation coefficient between a segment of coverage depth and a vector of 100 integers modeling a simple shape of sharp increases (or decreases) in transcription: x =???[0..0,1..1] (or x =???[1..1,0..0]).

Usage

test.corr(x, sharpInc = 1, cutCorr = 0.7, cutPVal = 1e-07, flag = 0)

Arguments

x	Segment of coverage depth.
sharpInc	Default value is 1.
cutCorr	Cutoff value for the correlation coefficient. Default values is 0.7.
cutPVal	Cutoff value for the p-value. Default values is 0.0000001.
flag	Indicate weather the correlation test is for a start- or end-point in transcription. Default values is 0 (start-point).

Author(s)

Vittorio Fortino test.corr()

CONDOP documentation built on May 2, 2019, 1:26 p.m.