getCondOperonMap: Build the condition-dependent operon map for a given RNA-seq...

In CONDOP: Condition-Dependent Operon Predictions

Description

Build the condition-dependent operon map for a given RNA-seq expression profile.

Usage

getCondOperonMap(pred.POPs, pred.DOPs, genes.and.operons, POSSs, POESs,
  find.ext = FALSE, BED.file = NA, TAB.file = NA, verbose = TRUE, ...)

Arguments

pred.POPs	Data table containing the POPs predicted as OPs.
pred.DOPs	Data table containing the DOPs predicted as OPs.
genes.and.operons	Data table merging gene(s) and operon(s) annotations. See join.genes.and.operons.
POSSs	Data table representing a set of putative operon start-points.
POESs	Data table representing a set of putative operon end-points.
find.ext	Add gene pairs predicted as OPs to confirmed operons.
BED.file	Save the condition-dependent operon map in a BED-like file.
TAB.file	Save the condition-dependent operon map in a tab-delimited text file file.
verbose	Default logical value is TRUE.
max.start.transc	Cutoff values for the start transcription points. Default values is 0.1.
max.end.transc	Cutoff values for the end transcription points. Default values is 0.1.

Author(s)

Vittorio Fortino getCondOperonMap()

CONDOP documentation built on May 2, 2019, 1:26 p.m.