pred.operon.status: Predict operon status of gene pairs (e.g., POPs, DOPs,...).

In CONDOP: Condition-Dependent Operon Predictions

Description

Internal function that uses the trained operon classifier to predict the operon status of POPs and DOPs.

Usage

pred.operon.status(list.cls, gene.pairs, type = "", cons = 1,
  verbose = TRUE, ...)

Arguments

gene.pairs	Gene pairs.
type	Character vector indicating the type of gene pairs (POPs or DOPs). See select.pops and select.ops.indoor.
cons	Numeric values indicating the minimum number of postive votes to classify a gen pair as operon pai. See select.pops and select.ops.indoor.
verbose	Default logical value is TRUE.
cls	List of classifiers. See train.rfs.

Author(s)

Vittorio Fortino

CONDOP documentation built on May 2, 2019, 1:26 p.m.