DAISIE_extract_stt_median: Extract the STT median from the output of DAISIE_sim...

In DAISIE: Dynamical Assembly of Islands by Speciation, Immigration and Extinction

Extract the STT median from the output of DAISIE_sim functions

Description

Extract the STT median from the output of DAISIE_sim functions

Usage

DAISIE_extract_stt_median(island_replicates, trait_pars = NULL)

Arguments

island_replicates

List output from DAISIE_sim_core_cr(), DAISIE_sim_core_time_dep(), DAISIE_sim_core_cr_shift() or DAISIE_sim_min_type2() functions. Minimally, this must be a list that has as many elements as replicates. Each element must be a list with the elements island_age, not_present and stt_all. stt_all must be a data frame with the column names Time, nI, nA, nC and present.

trait_pars

A named list containing diversification rates considering two trait states created by create_trait_pars: [1]:A numeric with the per capita transition rate with state1 [2]:A numeric with the per capita immigration rate with state2 [3]:A numeric with the per capita extinction rate with state2 [4]:A numeric with the per capita anagenesis rate with state2 [5]:A numeric with the per capita cladogenesis rate with state2 [6]:A numeric with the per capita transition rate with state2 [7]:A numeric with the number of species with trait state 2 on mainland

Value

a matrix (?)

DAISIE documentation built on Oct. 22, 2023, 1:06 a.m.