View source: R/DAISIE_format_GW.R
DAISIE_format_GW | R Documentation |
Formats guild-wide simulation output into standard DAISIE list output
DAISIE_format_GW(
island_replicates,
time,
M,
sample_freq,
num_guilds,
verbose = TRUE
)
island_replicates |
List output from
|
time |
Numeric defining the length of the simulation in time units. For example, if an island is known to be 4 million years old, setting time = 4 will simulate the entire life span of the island; setting time = 2 will stop the simulation at the mid-life of the island. |
M |
Numeric defining the size of mainland pool, i.e. the number of species that can potentially colonize the island. |
sample_freq |
Numeric specifing the number of units times should be divided by for plotting purposes. Larger values will lead to plots with higher resolution, but will also run slower. |
num_guilds |
The number of guilds on the mainland. The number of
mainland species is divided by the number of guilds when
|
verbose |
A numeric vector of length 1, which in simulations and 'DAISIEdataprep()' can be '1' or '0', where '1' gives intermediate output should be printed. For ML functions a numeric determining if intermediate output should be printed. The default: '0' does not print, '1' prints the initial likelihood and the settings that were selected (which parameters are to be optimised, fixed or shifted), '2' prints the same as '1 and also the intermediate output of the parameters and loglikelihood, while '3' the same as '2' and prints intermediate progress during likelihood computation. |
List with GW DAISIE simulation output
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.