DAISIE_format_IW_full_stt: Formats clade-specific simulation output into standard DAISIE...

View source: R/DAISIE_format_IW_full_stt.R

DAISIE_format_IW_full_sttR Documentation

Formats clade-specific simulation output into standard DAISIE list output with complete STT table

Description

Formats clade-specific simulation output into standard DAISIE list output with complete STT table

Usage

DAISIE_format_IW_full_stt(island_replicates, total_time, M, verbose)

Arguments

island_replicates

List output from DAISIE_sim_core_cr(), DAISIE_sim_core_time_dep(), DAISIE_sim_core_cr_shift() or DAISIE_sim_min_type2() functions. Minimally, this must be a list that has as many elements as replicates. Each element must be a list with the elements island_age, not_present and stt_all. stt_all must be a data frame with the column names Time, nI, nA, nC and present.

total_time

Numeric defining the length of the simulation in time units.

M

Numeric defining the size of mainland pool, i.e. the number of species that can potentially colonize the island.

verbose

In simulation and dataprep functions a logical, Default = TRUE gives intermediate output should be printed. For ML functions a numeric determining if intermediate output should be printed, Default = 0 does not print, verbose = 1 prints intermediate output of the parameters and loglikelihood, verbose = 2 means also intermediate progress during loglikelihood computation is shown.

Value

List with IW DAISIE simulation output


DAISIE documentation built on June 2, 2022, 5:07 p.m.