View source: R/DAISIE_loglik_integrate.R
DAISIE_loglik_integrate | R Documentation |
Integrates the loglikelihood of a single clade across a parameter weighted by a given distribution
DAISIE_loglik_integrate( pars1, pars2, brts, stac, missnumspec, CS_version, methode, abstolint, reltolint, verbose )
pars1 |
Vector of model parameters: |
pars2 |
Vector of settings: |
brts |
Numeric vector of branching times |
stac |
Numeric of Endemicity status |
missnumspec |
Numeric of missing species |
CS_version |
a numeric or list. Default is 1 for the standard DAISIE model, for a relaxed-rate model a list with the following elements:
|
methode |
Method of the ODE-solver. Supported Boost |
abstolint |
Numeric absolute tolerance of the integration |
reltolint |
Numeric relative tolerance of the integration |
verbose |
In simulation and dataprep functions a logical,
|
A loglikelihood value
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