DAISIE_margprobdist  R Documentation 
This function calculates the marginal distribution of the number of endemics and nonendemics and their sum for a given set of parameter values, a given mainland species pool size and a given set of times
DAISIE_margprobdist(
pars1,
pars2,
tvec,
initEI = c(0, 0),
initprobs = NULL,
pb = NULL
)
pars1 
Vector of model parameters: 
pars2 
Vector of settings: 
tvec 
The times at which the probabilities need to be computed. 
initEI 
The initial values for the number of endemics and
nonendemics. In 
initprobs 
The initial probability distribution for the number of endemics and nonendemics; either this or initEI must be NULL. 
pb 
Probability distribution in matrix format as output by

out 
A list of three vectors: 
Rampal S. Etienne
Valente, L.M., A.B. Phillimore and R.S. Etienne (2015). Equilibrium and nonequilibrium dynamics simultaneously operate in the Galapagos islands. Ecology Letters 18: 844852.
### Compute the marginal probability distributions at t = 4 and t = 8, for a mainland
# pool size of 250 potential colonists and a vector of 5 parameters (cladogenesis,
# extinction, cladelevel carrying capacity, immigration, anagenesis) starting from
# an empty island
marg_prob_dists < DAISIE_margprobdist(
pars1 = c(0.3,0.35,Inf,0.75,0.012),
pars2 = c(100,250),
tvec = c(4,8),
initEI = c(5,1),
initprobs = NULL
)
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