summarize_kmer-phyDat-method: summarize_kmer

In DCLEAR: Distance Based Cell Lineage Reconstruction

summarize_kmer

Description

Summarize kmer distributions with input sequences

Usage

## S4 method for signature 'phyDat'
summarize_kmer(
  x,
  division = 16L,
  k = 2,
  reps = 20L,
  n_samples = 200L,
  n_nodes = 100L,
  n_targets
)

Arguments

x	input data as a phyDat object
division	number of cell division
k	k-mer (default = 2)
reps	number of simulated trees
n_samples	number of samples to simulate
n_nodes	number of nodes to sample (including both leaves and internval nodes)
n_targets	sequence length. If this argument is missing, the length of the input sequences will be used.

Value

a kmer_summary object

Author(s)

Wuming Gong ([e-mail])

DCLEAR documentation built on Sept. 14, 2023, 9:09 a.m.