Files in DCLEAR
Distance Based Cell Lineage Reconstruction
MD5
README.md
NAMESPACE
DESCRIPTION
R/RcppExports.R
R/get_leaves.r
R/as_phylo.r
R/subtree.r
R/WH_train_fit.r
R/lineages-data.r
R/dist_weighted_hamming.r
R/as_igraph.r
R/prune.r
R/WH_train.r
R/rbind.r
R/process_sequence.r
R/as_lineage_tree.r
R/simulate.r
R/AllGeneric.r
R/subtract.r
R/WH.R
R/sim_seq.R
R/globals.r
R/summarize_kmer.r
R/dist_replacement.r
R/substr_kmer.r
R/downsample.r
R/AllClass.r
R/DCLEAR-package.r
src/Makevars.win
src/Makevars
src/RcppExports.cpp
src/DCLEAR.cpp
inst/doc/PrepC3.R
inst/doc/PrepC3.Rmd
inst/doc/PrepC3.html
inst/doc/WHhowto.html
inst/doc/WHhowto.Rmd
inst/doc/WHhowto.R
build/vignette.rds
vignettes/PrepC3.Rmd
vignettes/WHhowto.Rmd
data/lineages.RData
man/sample_mutation_outcome.Rd
man/summarize_kmer.Rd
man/dist_weighted_hamming.Rd
man/downsample-lineage_tree-method.Rd
man/substr_kmer.Rd
man/get_replacement_probability.Rd
man/WH_train.Rd
man/substr_kmer-kmer_summary-method.Rd
man/dist_kmer_replacement_inference.Rd
man/prune.Rd
man/get_transition_probability.Rd
man/downsample.Rd
man/get_leaves-lineage_tree-method.Rd
man/dist_replacement.Rd
man/lineages.Rd
man/prune-igraph-method.Rd
man/simulate-lineage_tree_config-missing-method.Rd
man/get_leaves.Rd
man/get_distance_prior.Rd
man/add_deletion.Rd
man/as_igraph-data.frame-method.Rd
man/as_igraph.Rd
man/positional_mutation_prob.Rd
man/subtract-lineage_tree-lineage_tree-method.Rd
man/add_dropout.Rd
man/dist_weighted_hamming-phyDat-numeric-method.Rd
man/rbind-phyDat-method.Rd
man/dist_replacement-phyDat-missing-integer-method.Rd
man/sim_seqdata.Rd
man/process_sequence.Rd
man/simulate_core.Rd
man/subtree.Rd
man/summarize_kmer_core.Rd
man/as_lineage_tree.Rd
man/subtree-phylo-method.Rd
man/DCLEAR.Rd
man/simulate-lineage_tree_config-phyDat-method.Rd
man/WH.Rd
man/simulate.Rd
man/as_phylo-igraph-method.Rd
man/process_sequence-phyDat-method.Rd
man/sample_outcome_prob.Rd
man/summarize_kmer-phyDat-method.Rd
man/subtree-lineage_tree-method.Rd
man/as_igraph-phylo-method.Rd
man/as_lineage_tree-phyDat-phylo-lineage_tree_config-method.Rd
man/dist_replacement-phyDat-kmer_summary-integer-method.Rd
man/downsample-igraph-method.Rd
man/get_sequence.Rd
man/as_phylo.Rd
man/prune-lineage_tree-method.Rd
man/sample_mutation_site.Rd
man/random_tree.Rd
man/score_simulation.Rd
man/subtract.Rd
man/get_node_names.Rd
man/WH_train_fit.Rd
