API for DCLEAR
Distance Based Cell Lineage Reconstruction

Global functions
DCLEAR Man page
WH Man page Source code
WH_train Man page Source code
WH_train_fit Man page Source code
as_igraph Man page
as_igraph,phylo-method Man page
as_lineage_tree Man page
as_lineage_tree,phyDat,phylo,lineage_tree_config-method Man page
as_phylo Man page
as_phylo,igraph-method Man page
dist_kmer_replacement_inference Man page Source code
dist_replacement Man page
dist_replacement,phyDat,kmer_summary,integer-method Man page
dist_replacement,phyDat,missing,integer-method Man page
dist_w_ham Source code
dist_w_ham2 Source code
dist_weighted_hamming Man page
dist_weighted_hamming,phyDat,numeric-method Man page
downsample Man page
downsample,igraph-method Man page
downsample,lineage_tree-method Man page
get_distance_prior Man page Source code
get_leaves Man page
get_leaves,lineage_tree-method Man page
get_node_names Man page Source code
get_replacement_probability Man page Source code
get_transition_probability Man page Source code
lineages Man page
positional_mutation_prob Man page Source code
process_sequence Man page
process_sequence,phyDat-method Man page
prune Man page
prune,igraph-method Man page
prune,lineage_tree-method Man page
random_tree Man page Source code
rbind,phyDat-method Man page
sample_outcome_prob Man page Source code
sim_seqdata Man page Source code
simulate Man page
simulate,lineage_tree_config,missing-method Man page
simulate,lineage_tree_config,phyDat-method Man page
simulate_core Man page Source code
substr_kmer Man page
substr_kmer,kmer_summary-method Man page
subtract Man page
subtract,lineage_tree,lineage_tree-method Man page
subtree Man page
subtree,lineage_tree-method Man page
subtree,phylo-method Man page
summarize_kmer Man page
summarize_kmer,phyDat-method Man page
summarize_kmer_core Man page Source code
DCLEAR documentation built on Sept. 5, 2021, 5:21 p.m.