Man pages for DCLEAR
Distance Based Cell Lineage Reconstruction

as_igraphGeneric function for as_igraph
as_igraph-phylo-methodas_igraph
as_lineage_treeGeneric function for as_lineage_tree
as_lineage_tree-phyDat-phylo-lineage_tree_config-methodas_lineage_tree
as_phyloGeneric function for as_phylo
as_phylo-igraph-methodas_phylo
DCLEARDCLEAR: A package for DCLEAR: Distance based Cell LinEAge...
dist_kmer_replacement_inferenceCore function of computing kmer replacement distance
dist_replacementGeneric function for dist_replacement
dist_replacement-phyDat-kmer_summary-integer-methodCompute the kmer replacement distance
dist_replacement-phyDat-missing-integer-methodCompute the kmer replacement distance
dist_weighted_hammingGeneric function for dist_weighted_hamming
dist_weighted_hamming-phyDat-numeric-methoddist_weighted_hamming
downsampleGeneric function for downsample
downsample-igraph-methoddownsample
downsample-lineage_tree-methoddownsample
get_distance_priorget_distance_prior
get_leavesGeneric function for get_leaves
get_leaves-lineage_tree-methodget_leaves
get_node_namesget_node_names
get_replacement_probabilityget_replacement_probability
get_transition_probabilityget_transition_probability
lineagesLineage data
positional_mutation_probpositional_mutation_prob
process_sequenceGeneric function for process_sequence
process_sequence-phyDat-methodProcess sequences
pruneGeneric function for prune
prune-igraph-methodprune
prune-lineage_tree-methodprune
random_treerandom_tree
rbind-phyDat-methodrbind
sample_outcome_probsample_outcome_prob
sim_seqdatasim_seqdata
simulateGeneric function for simulate
simulate_coresimulate_core
simulate-lineage_tree_config-missing-methodsimulate
simulate-lineage_tree_config-phyDat-methodsimulate
substr_kmerGeneric function for substr_kmer
substr_kmer-kmer_summary-methodSubseting a kmer_summary object
subtractGeneric function for subtract
subtract-lineage_tree-lineage_tree-methodsubtract
subtreeGeneric function for subtree
subtree-lineage_tree-methodsubtree
subtree-phylo-methodsubtree
summarize_kmerGeneric function for summarize_kmer
summarize_kmer_coresummarize_kmer_core
summarize_kmer-phyDat-methodsummarize_kmer
WHWH
WH_trainTrain weights for WH
WH_train_fitTrain weights for WH, and output distance object
DCLEAR documentation built on Sept. 5, 2021, 5:21 p.m.