API for HTSSIP
High Throughput Sequencing of Stable Isotope Probing Data Analysis
| Global functions | |
|---|---|
| .BD_shift | Source code |
| .binary_test | Source code |
| .overlap_fracs | Source code |
| .perm_otu | Source code |
| .perm_overlap | Source code |
| .qPCR_sim | Source code |
| .qSIP_bootstrap | Source code |
| .t_test | Source code |
| .wilcox_test | Source code |
| BD_shift | Man page Source code |
| DESeq2_l2fc | Man page Source code |
| HRSIP | Man page Source code |
| HTSSIP | Man page |
| HTSSIP-package | Man page |
| HTSSIP_sim | Man page Source code |
| OTU_qPCR_trans | Man page Source code |
| SIP_betaDiv_ord | Man page Source code |
| as.Num | Man page Source code |
| calc_Gi | Man page Source code |
| calc_Mheavymax | Man page Source code |
| calc_atom_excess | Man page Source code |
| data-physeq_S2D1 | Man page |
| data-physeq_S2D1_l | Man page |
| data-physeq_S2D2 | Man page |
| data-physeq_S2D2_l | Man page |
| data-physeq_rep3 | Man page |
| data-physeq_rep3_qPCR | Man page |
| delta_BD | Man page Source code |
| evaluate_matches | Man page Source code |
| expr_param_extract | Man page Source code |
| extract_expressions | Man page Source code |
| extract_formats | Man page Source code |
| filter_l2fc | Man page Source code |
| format_metadata | Man page Source code |
| fraction_overlap | Man page Source code |
| get_treatment_params | Man page Source code |
| gm_mean | Source code |
| gradient_sim | Man page Source code |
| heavy_SIP | Man page Source code |
| lin_interp | Source code |
| match_brace | Man page Source code |
| match_placeholders | Man page Source code |
| max_BD_range | Man page Source code |
| overlap_wmean_dist | Man page Source code |
| parse_dist | Man page Source code |
| perc_overlap | Man page Source code |
| phyloseq2df | Man page Source code |
| phyloseq2table | Man page Source code |
| phyloseq_list_ord_dfs | Man page Source code |
| phyloseq_ord_plot | Man page Source code |
| phyloseq_subset | Man page Source code |
| physeq_S2D1 | Man page |
| physeq_S2D1_l | Man page |
| physeq_S2D2 | Man page |
| physeq_S2D2_l | Man page |
| physeq_format | Man page Source code |
| physeq_list_betaDiv | Man page Source code |
| physeq_list_ord | Man page Source code |
| physeq_rep3 | Man page |
| physeq_rep3_qPCR | Man page |
| qPCR_sim | Man page Source code |
| qSIP_atom_excess | Man page Source code |
| qSIP_atom_excess_format | Man page Source code |
| qSIP_bootstrap | Man page Source code |
| sample_W | Source code |
| stringterpolate | Man page Source code |
| tss | Man page Source code |
