calculating ordinations from a list of distance matrices

Share:

Description

For each dist object in a provided list, the fucntion calculates an ordination with the phyloseq::ordinate function.

Usage

1
physeq_list_ord(physeq_l, physeq_l_d, ord_method = "NMDS")

Arguments

physeq_l

A list of phyloseq objects

physeq_l_d

A list of dist objects

ord_method

See phyloseq::ordinate

Value

List of ordination objects

Examples

1
2
3
4
5
6
7
8
data(physeq_S2D2_l)
## Not run: 
# make a list of beta diversity distance matrix objects
physeq_S2D2_l_d = physeq_list_betaDiv(physeq_S2D2_l)
# make a list of ordinations
physeq_S2D2_l_d_ord = physeq_list_ord(physeq_S2D2_l, physeq_S2D2_l_d)

## End(Not run)

Want to suggest features or report bugs for rdrr.io? Use the GitHub issue tracker.