High Throughput Sequencing of Stable Isotope Probing Data Analysis

Vignettes

- README.md
- BD shifts
- Beta diversity ordinations
- heavy-SIP
- HTS-SIP data simulation
- HTSSIP introduction
- MW-HR-SIP
- q-SIP
- Quantifying isotope incorporation

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**calc_Gi:**Calculate G+C from unlabeled buoyant density**data-physeq_S2D2_l:**(Data) A subset of full HTS-SIP dataset (Substrates=2,...**DESeq2_l2fc:**Calculating log2 fold change for HTS-SIP data.**HRSIP:**(MW-)HR-SIP analysis**perc_overlap:**Calculate the percent overlap between two ranges (x & y).**physeq_list_betaDiv:**calculating beta diversity for a list of phyloseq objects**tss:**Total sum scaling**Browse all...**

Popular Man pages

1 of the 2 'substrates' is the 12C-control; the other is the 13C-labeled substrate.

The dataset has been parsed into a list of corresponding 13C-treatment vs 12C-control comparisons. Each comparison is of all gradient fraction samples of the treatment vs the gradient fraction samples of the control.

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