Description Usage Arguments Details Value Examples
View source: R/BD_ordinations.R
For each phyloseq object in a list, calculates beta-diversity between all samples using the phyloseq::distance function.
1 2 |
physeq_l |
A list of phyloseq objects |
method |
See phyloseq::distance |
weighted |
Weighted Unifrac (if calculating Unifrac) |
fast |
Fast calculation method |
normalized |
Normalized abundances |
parallel |
Calculate in parallel |
Note: for calculating Unifrac values, phyloseq will select a root at random if the input phylogeny is not rooted.
List of dist objects
1 2 3 4 5 | data(physeq_S2D2_l)
## Not run:
physeq_S2D2_l_d = physeq_list_betaDiv(physeq_S2D2_l)
## End(Not run)
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.