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HTSSIP is an R package for analyzing high throughput sequence data from nucleotide stable isotope probing (DNA- & RNA-SIP) experiments.

Available analyzes


All documentation can be found on CRAN.

A good place to start is the HTSSIP introduction vignette.

The manuscript describing HTSSIP is:

Youngblut ND, Barnett SE, Buckley DH (2018) HTSSIP: An R package for analysis of high throughput sequencing data from nucleic acid stable isotope probing (SIP) experiments. PLoS ONE 13(1): e0189616.


See References in the HTSSIP introduction vignette.


To get the current released version from CRAN:


To get the current development version from github:

# install.packages("devtools")

Try the HTSSIP package in your browser

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HTSSIP documentation built on Sept. 14, 2019, 1:02 a.m.