phyloseq2df: phyloseq data object conversion to data.frame
In HTSSIP: High Throughput Sequencing of Stable Isotope Probing Data Analysis
Description
Usage
Arguments
Value
Examples
Description
Conducts conversion of 1 of the data objects
in a phyloseq object (eg., tax_table) to a dataframe
Usage
1
phyloseq2df(physeq, table_func)
Arguments
physeq
Phyloseq object
table_func
See Phyloseq::phyloseq-class for options
Value
data.frame
Examples
1
2
3
4
5
6
data(physeq_S2D1)
df_otu = phyloseq2df(physeq_S2D1, table_func=phyloseq::otu_table)
head(df_otu)
df_sample = phyloseq2df(physeq_S2D1, table_func=phyloseq::sample_data)
head(df_sample)
HTSSIP documentation built on Sept. 14, 2019, 1:02 a.m.
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Description Usage Arguments Value Examples
Description
Conducts conversion of 1 of the data objects in a phyloseq object (eg., tax_table) to a dataframe
Usage
1 | phyloseq2df(physeq, table_func)
|
Arguments
physeq |
Phyloseq object |
table_func |
See |
Value
data.frame
Examples
1 2 3 4 5 6 | data(physeq_S2D1)
df_otu = phyloseq2df(physeq_S2D1, table_func=phyloseq::otu_table)
head(df_otu)
df_sample = phyloseq2df(physeq_S2D1, table_func=phyloseq::sample_data)
head(df_sample)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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