High Throughput Sequencing of Stable Isotope Probing Data Analysis

Vignettes

- README.md
- BD shifts
- Beta diversity ordinations
- heavy-SIP
- HTS-SIP data simulation
- HTSSIP introduction
- MW-HR-SIP
- q-SIP
- Quantifying isotope incorporation

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**calc_Gi:**Calculate G+C from unlabeled buoyant density**data-physeq_S2D2_l:**(Data) A subset of full HTS-SIP dataset (Substrates=2,...**DESeq2_l2fc:**Calculating log2 fold change for HTS-SIP data.**filter_l2fc:**Filter l2fc table**HRSIP:**(MW-)HR-SIP analysis**perc_overlap:**Calculate the percent overlap between two ranges (x & y).**phyloseq_subset:**Make a list of phyloseq object subsets**physeq_list_betaDiv:**calculating beta diversity for a list of phyloseq objects**qPCR_sim:**Simulate qPCR values**tss:**Total sum scaling**Browse all...**

Related packages

6 gradients:

*12C-control, replicate 1

*12C-control, replicate 2

*12C-control, replicate 3

*13C-treatment, replicate 1

*13C-treatment, replicate 2

*13C-treatment, replicate 3

HTSSIP documentation built on May 15, 2018, 9:03 a.m.

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