AddDBSClass: Add DBS mutation class to an annotated DBS VCF
In ICAMS: In-Depth Characterization and Analysis of Mutational Signatures ('ICAMS')
AddDBSClass R Documentation
Add DBS mutation class to an annotated DBS VCF
Description
Add DBS mutation class to an annotated DBS VCF
Usage
AddDBSClass(vcf)
Arguments
vcf
An in-memory VCF file annotated with sequence context and
transcript information by function AnnotateDBSVCF. It must
*not* contain indels and must *not* contain SBS (single base
substitutions), or triplet base substitutions etc.
Value
The original vcf with three additional columns
DBS78.class, DBS136.class and DBS144.class added.
ICAMS documentation built on June 22, 2024, 6:47 p.m.
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| AddDBSClass | R Documentation |
Add DBS mutation class to an annotated DBS VCF
Description
Add DBS mutation class to an annotated DBS VCF
Usage
AddDBSClass(vcf)
Arguments
vcf |
An in-memory VCF file annotated with sequence context and
transcript information by function |
Value
The original vcf with three additional columns
DBS78.class, DBS136.class and DBS144.class added.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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