CreateTransRanges: Create a transcript range file from the raw GFF3 File
In ICAMS: In-Depth Characterization and Analysis of Mutational Signatures ('ICAMS')
View source: R/utility_functions.R
CreateTransRanges R Documentation
Create a transcript range file from the raw GFF3 File
Description
Create a transcript range file from the raw GFF3 File
Usage
CreateTransRanges(file)
Arguments
file
The name/path of the raw GFF3 File, or a complete URL.
Value
A data table which contains chromosome name, start, end position,
strand information and gene name. It is keyed by chrom, start, and
end. Only genes that are associated with a CCDS ID are kept for
transcriptional strand bias analysis.
ICAMS documentation built on June 22, 2024, 6:47 p.m.
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View source: R/utility_functions.R
| CreateTransRanges | R Documentation |
Create a transcript range file from the raw GFF3 File
Description
Create a transcript range file from the raw GFF3 File
Usage
CreateTransRanges(file)
Arguments
file |
The name/path of the raw GFF3 File, or a complete URL. |
Value
A data table which contains chromosome name, start, end position, strand information and gene name. It is keyed by chrom, start, and end. Only genes that are associated with a CCDS ID are kept for transcriptional strand bias analysis.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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