CheckSBSClassInVCF: Check SBS mutation class in VCF with the corresponding SBS...

In ICAMS: In-Depth Characterization and Analysis of Mutational Signatures ('ICAMS')

Check SBS mutation class in VCF with the corresponding SBS mutation matrix

Description

Check SBS mutation class in VCF with the corresponding SBS mutation matrix

Usage

CheckSBSClassInVCF(vcf, mat, sample.id)

Arguments

vcf	An annotated SBS VCF with columns of SBS mutation classes added by AddSBSClass.
mat	The SBS mutation count matrix.
sample.id	Usually the sample id, but defaults to "count".

ICAMS documentation built on June 15, 2025, 1:08 a.m.