Canonicalize1INS: Given an insertion and its sequence context, categorize it.

In ICAMS: In-Depth Characterization and Analysis of Mutational Signatures ('ICAMS')

Given an insertion and its sequence context, categorize it.

Description

Given an insertion and its sequence context, categorize it.

Usage

Canonicalize1INS(context, ins.sequence, pos, trace = 0)

Arguments

context	The deleted sequence plus ample surrounding sequence on each side (at least as long as ins.sequence * 6).
ins.sequence	The deleted sequence in context.
pos	The position of ins.sequence in context.
trace	If > 0, then generate messages tracing how the computation is carried out.

Value

A string that is the canonical representation of the given insertion type.

ICAMS documentation built on June 22, 2024, 6:47 p.m.